Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKIQQLQHHFGSHKVI--HNFNLDISKGEIVTFIGKSGCGKSTLLNVIGGFIHPSSGRVIIDNEIKQQ------PSPD--CLMLFQHHNLLPWKTINDNIRIGF-QQKISDEEINAQL----KLVDLEDRGKHFPEQLSGGMKQRVALCRAHVHKPNVILMDEPLGALDAFTRYKLQDQLVQLKHKTQSTIILVTHDIDEAIYLSDRIVLLGEGCNIISQYEITASHPRSRNDSHLLKIRNEIMETFALNHHQVEPEYYL
1OXV Chain:B ((4-217))
-IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKG----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1OXV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123761 for 1509 contacts (-82.0/contact) +
2D Compatibility (PS) -21870 + (NN) -12842 + (LL) 3700
1D Compatibility (HY) -17200 + (ID) 3450
Total energy: -175423.0 ( -116.25 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_1OXV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OXV-query.scw
PDB file :
Tito_Scwrl_1OXV.pdb
: