Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHNDLKEVLLTEEDIQNICKELGAQLTKDYQGK-------PLVCVGILKGSAMFMSDLIKRI---DTHLSIDFMDVSSYHGGTESTGEVQIIKDLGSSIENKDVLIIEDILETGTTLKSITELLQSRKVNSLEIVTLLDKPNRRKADIEAKYVGKKIPDEFVVGYGLDYRELYRNLPYIGTLKPEVYSN
1TC2 Chain:A ((9-190))
-----EKILFTEEEIRTRIKEVAKRIADDYKGKGLRPYVNPLVLISVLKGSFMFTADLCRALCDFNVPVRMEFICVSSYGEGLTSSGQVRMLLDTRHSIEGHHVLIVEDIVDTALTLNYLYHMYFTRRPASLKTVVLLDKREGRRVPFSADYVVANIPNAFVIGYGLDYDDTYRELRDIVVLRPEVY--
General information:
TITO was launched using:
RESULT:
Template:
1TC2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120304 for 1319 contacts (-91.2/contact) +
2D Compatibility (PS) -18659 + (NN) -3748 + (LL) 164
1D Compatibility (HY) -20800 + (ID) 3750
Total energy: -167097.0 ( -126.68 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_1TC2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TC2-query.scw
PDB file :
Tito_Scwrl_1TC2.pdb
: