Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKATTIIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQKHLTFDERLETNYDHPFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDITIDFKPKDVIIVEGIFALENKVLRDMMDVKIYVDTDADLRILRRLTRDTKERGRSMDSVINQYLSVVRPMHDQFIEPTKKYADIIIPEGGSNKVAIDIMTTKIQSLVSKQ |
1VHT Chain:A ((2-40)) | -SLRYIVALTGGIGSGKSTVANAFAD-LG---INVIDADIIARQ------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VHT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -8992 for 165 contacts (-54.5/contact) +
2D Compatibility (PS) -4180 + (NN) -2098 + (LL) 11472
1D Compatibility (HY) -3600 + (ID) 600
Total energy: -7998.0 ( -48.47 by residue)
QMean score : 0.200
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