Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVVVQRVKEASVT-NDTLNNQIKKGYCLLVGIGQNSTEQDADVIAKKIANARLFEDDNNK-LNFNIQQMNGEILSVSQFTLYADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRA--YGLTVKTGEFGTHMNVSINNDGPVTIIYESQDGKIQ
2OKV Chain:D ((1-147))
MKAVVQRVTRASVTVGGEQISAIGRGICVLLGISLEDTQKELEHMVRKILNLRVFEDESGKHWSKSVMDKQYEILCVSQFTLQC-VLKGNKPDFHLAMPTEQAEGFYNSFLEQLRKTYRPELIKDGKFGAYMQVHIQNDGPVTIELES------
General information:
TITO was launched using:
RESULT:
Template:
2OKV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64307 for 1053 contacts (-61.1/contact) +
2D Compatibility (PS) -16090 + (NN) -8330 + (LL) 184
1D Compatibility (HY) -10400 + (ID) 3150
Total energy: -102093.0 ( -96.95 by residue)
QMean score : 0.452
(partial model without unconserved sides chains):
PDB file :
Tito_2OKV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OKV-query.scw
PDB file :
Tito_Scwrl_2OKV.pdb
: