Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKIGIFFGTDSGNAEAIAEKISKAIGNAEVIDVAKASKEQFNGFTKVILVAPTAGAGDLQTDWEDFLGTLEASDFANKTIGLVGLGDQDTYSETFAEGIFHIYEK-AKAGKVVGQTPTDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERIAKWVEQVKGSFA
2BMV Chain:A ((2-164))
-GKIGIFFGTDSGNAEAIAEKISKAIGNAEVVDVAKASKEQFNSFTKVILVAPTAGAGDLQTDWEDFLGTLEASDFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA-GKVVGQTSTDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERISKWVEQVKGSFA
General information:
TITO was launched using:
RESULT:
Template:
2BMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101900 for 1398 contacts (-72.9/contact) +
2D Compatibility (PS) -17477 + (NN) -7649 + (LL) 352
1D Compatibility (HY) -19200 + (ID) 7800
Total energy: -153674.0 ( -109.92 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_2BMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BMV-query.scw
PDB file :
Tito_Scwrl_2BMV.pdb
: