Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTMNSVLECKELALYGGSFDPLHKAHLAIIEQTLELLPFV------QLIVLPAYQNPFKKPCFLDAKTRFKELERALKGMPRVLLSDFEIKQERAVPTIESVLHFQKL---YR-PKTLYLVIGADCLRHLS---SWTN--AKELLKRVELVVFERIGYEEIQFK----------GRYHPL-KGIDAPISSSAIRASLGV
1KQN Chain:A ((6-231))
--------KTEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKKK-GLIPAYHRVIMAELATKNSKWVEVDTWESLQKEWKETLKVLRHHQEKLEA--AVPKVKLLCGADLLESFAVPNLWKSEDITQIVANYGLICVTRAGNDAQKFIYESDVLWKHRSNIHVVNEWIANDISSTKIRRALRR
General information:
TITO was launched using:
RESULT:
Template:
1KQN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97403 for 1207 contacts (-80.7/contact) +
2D Compatibility (PS) -17537 + (NN) -6992 + (LL) 700
1D Compatibility (HY) -7200 + (ID) 2050
Total energy: -130482.0 ( -108.10 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_1KQN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KQN-query.scw
PDB file :
Tito_Scwrl_1KQN.pdb
: