Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQSHQNLQSQFFIEHILQILPHRYPMLLVDRIIELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQTGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE
3CF8 Chain:D ((8-159))
-------LQSQFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE
General information:
TITO was launched using:
RESULT:
Template:
3CF8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119326 for 1167 contacts (-102.3/contact) +
2D Compatibility (PS) -15886 + (NN) -2268 + (LL) 488
1D Compatibility (HY) -24400 + (ID) 7500
Total energy: -168892.0 ( -144.72 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_3CF8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CF8-query.scw
PDB file :
Tito_Scwrl_3CF8.pdb
: