Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNNLKLSEEIKRAINELGYTEATPVQKAVIPVALTGED--IVAKSQTGSGKTAAFAIPIAEQVEWEENKPQ----ALIIVPTRELAMQVKTECTNIGR----FKRVKAAAIYGQSPF--AKQKLELSQKNHIVVGTPGRLLDHIEKGSLNVDK-VAHLVLDEVDEMLSMGFIDQVEDILSRLPKQR-------QNLFFSATMPEEMQDLIKRY-------------QDNPMVIE------MASEK-TNPIF----HVEMQTDNKEKTLKDVLITENPDSAIIFCNT-KNQVDELTDLLDVKASKIHGGLRQEDRFRAMDDFKSGKSRFLIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFVKTNENPLLRDIEEMLDVTIEKKRKPTVIEVKVNEDAFRKKQQKRPTIKKARGEKLNKNIMKLYFNGGKKKKIRAVDFVGTISKLEGITAEDIGIITIEDHVSFVEILNGKGPAVLEMMRSRKVKGRRLKVNEARKR |
| 3SQW Chain:A ((28-419)) | -----LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPN-IVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK-----DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEK---------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SQW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -146174 for 2823 contacts (-51.8/contact) +
2D Compatibility (PS) -37235 + (NN) -11303 + (LL) 9024
1D Compatibility (HY) -28000 + (ID) 6300
Total energy: -219988.0 ( -77.93 by residue)
QMean score : 0.431
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