Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGLTKIEIITRPNRFHLFQKELAKIGVSGLTVTKALGTGLEKGFIELYRGTK-KESNIHERMKIEIVVSTVPVEDVLRVVKETLRTGEPGDGKVFIYPLAEVVKISTGETGIDALQDKPSK
2RD5 Chain:C ((11-121))
-SKFYKVEAIVRPWRIQQVSSALLKIGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVKKDQVESVINTIIEGARTGEIGDGKIFVLPVSDVIRVRTGERG----------
General information:
TITO was launched using:
RESULT:
Template:
2RD5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40648 for 691 contacts (-58.8/contact) +
2D Compatibility (PS) -12612 + (NN) -7671 + (LL) 660
1D Compatibility (HY) -6800 + (ID) 2200
Total energy: -69271.0 ( -100.25 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_2RD5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RD5-query.scw
PDB file :
Tito_Scwrl_2RD5.pdb
: