Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LQNYSKSEKAFKEAKKVLPGGVNSPVRAFNSVDASPVFMDHGKGAYITDVDGNEYIDYVLSWGPLILGHTDPAVVNAITKAA--LKGTSFGTPTEIETELAKLVIERVPSIEIVRMVSSGTEATMSAIRLARGYTK------REKILKFEGSYHGHGDSLLIKAGSGVATLGLPDSPGVTKGLA---ADTITVPYNDIEGAKLAFEKYGEEIAAVIVEPVAGNMGVVPPIEGFLEGLRELTTKFGSLLIFDEVMTGF-RVDYYSAQGYYVVTPDLTCLGKVIGGGLPVGAYGGKKEIME--QIAPAGSIYQAGTLSGNPLAM---NAGFETVRQLTPQHYDVFRTLIKRMEEGLTEISARRQVPLSINKAGSMFGFFFTDQKVINFDTAKTSNLEFFRNYYREMLGQGIFLPPSQFEGVFISTMHTENEIDKTLEAFDTTCKILRG |
| 4JF1 Chain:B ((46-358)) | -----------------------------------------GKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDATFA-ERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGQ--SLF--------TVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVMD---DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAFHVGSHGSTY-----GGNPLACAVAGATFDIIN--TPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIG----------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JF1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -123449 for 2437 contacts (-50.7/contact) +
2D Compatibility (PS) -32399 + (NN) -14794 + (LL) 7884
1D Compatibility (HY) -16400 + (ID) 5350
Total energy: -184508.0 ( -75.71 by residue)
QMean score : 0.493
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