Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKLISWNVNGLRAAVKKGFLEYFEEVDADIFCLQETKLQEGQIELDLP---AYKDYWNYAVKKGYSGTAIFTKVEPLSVQYGLGIPEHDTEGRVITLEFEEFFMVTVYTPNSQAELKRLDYRMTFEDA---ILEYVKNLDNTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDA-GFIDSFRYFYPDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVLGSDHCPVELELNL
4B5H Chain:A ((2-253))
LKIISANVNGIRSAYKKGFYEYIAASGTDIVCVQELKAQEADLSADMKNPHGMHGHWHCAEKRGYSGVAVYSKRKPDNVQIGMGIEEFDREGRFVRCDFGRLSVISLYLPSGSSAEERQQVKYRFLDAFYPMLEAMKN--EGRDIVVCGNWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWRTLYPDVP-GYTWWSNRGQAYAKDVGWRIDYQMVTPELAAKAVSAHVYKDEKFSDHAPLVVE---
General information:
TITO was launched using:
RESULT:
Template:
4B5H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118945 for 2045 contacts (-58.2/contact) +
2D Compatibility (PS) -26898 + (NN) -11905 + (LL) 296
1D Compatibility (HY) -20000 + (ID) 5250
Total energy: -182702.0 ( -89.34 by residue)
QMean score : 0.474
(partial model without unconserved sides chains):
PDB file :
Tito_4B5H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4B5H-query.scw
PDB file :
Tito_Scwrl_4B5H.pdb
: