Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MKKLVATAPRVAVLVEYNDREVLEDEVKIKVQFASPKHGTEVVDFRGISPFIDEEFSPEWNLFVSRETNSARGIVFGEFQLGNMVVGEVVERGSKVTEYALGDIV-------------CSYGPIM---------------------------ETVIVKAVDNYKLRKLPKGANWKN-----AVCYDPAQFAMSGVRDAHVRAGDYVVVVGLGAIGQIAIQLAKKAGASVVIGVDPLSHRREIAEKHGADATFDPITTDVGLEVKRLTGKLGADSIIETSG---------------NAAALQAALRGIAYGGTISYVAFAKPFPEGFNLGREAHFNNAKIVFSRAASEP-NPDYPRWDRKRIEETCWELLMNGYLDCSDII-DPVVPFADSAESYMKYVDQQPDLSIKMGITL------ |
| 1KOL Chain:A ((2-397)) | GNRGVVYLGSGKVEVQKIDYPKMQDPR-------GKKIEHGVILKVVSTNICGSDQHMVRGRTTAQVGL-----------VLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFN-LLKLPDRDKAMEKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVT-EDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGYGEFDAGVP---KKFVIDPHKTFSA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KOL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -124060 for 2754 contacts (-45.0/contact) +
2D Compatibility (PS) -35676 + (NN) -10456 + (LL) 1792
1D Compatibility (HY) -7200 + (ID) 3050
Total energy: -178650.0 ( -64.87 by residue)
QMean score : 0.412
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