Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVRGFELVSQFSNKELLPKRETAHAAGYDLKVAK--KTVIEPGEITLVPTGIKAHMQP-GEVLYLYDRSSNPRKKGIVLINSVGVIDGDYYNNQVNEGHIFAQMQNITDQAVILEEGERIVQAVFAPFL-----LADDDQATGMRTGGFGSTGK
3TQZ Chain:A ((13-141))
--------LDKRLGSEFPLPAYATTGSAGLDLRACLDEPLKIEPDETCLISTGLAIYLGHSNVAATILPRSGLGHKHGIVLGNLVGLIDSDY------QGPLMVSCWNRGKEPYTINPGDRIAQLVVLPILKAQFAVVEEFEL-------------
General information:
TITO was launched using:
RESULT:
Template:
3TQZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39978 for 818 contacts (-48.9/contact) +
2D Compatibility (PS) -12845 + (NN) -2909 + (LL) 536
1D Compatibility (HY) -7200 + (ID) 1900
Total energy: -64296.0 ( -78.60 by residue)
QMean score : 0.392
(partial model without unconserved sides chains):
PDB file :
Tito_3TQZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TQZ-query.scw
PDB file :
Tito_Scwrl_3TQZ.pdb
: