Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGLFITFEGPEGAGKTTVLQEIKNILTAEGL-QVMATREPGGIDIAEQIREVILNEN-NILMDPKTEALLYAAARRQHLVEKVKPALEQGFIVLCDRFIDSSLAYQGYARGLGIDEVLSINEFAIGDMMPHVTVYFSIDPEEGLKRIYANGSREKNRLDLEKLDFHTKVQEGYQELMKRFPERFHSVDAGQSKDLVVQDVLKVIDEALKKIQL
3LV8 Chain:A ((26-233))
-NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLER-------ELDRIEKMDISFFERARERYLELANS-DDSVVMIDAAQSIEQVTADIRRALQDWLSQV--
General information:
TITO was launched using:
RESULT:
Template:
3LV8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90818 for 1604 contacts (-56.6/contact) +
2D Compatibility (PS) -22251 + (NN) -11754 + (LL) 896
1D Compatibility (HY) -8000 + (ID) 3650
Total energy: -135577.0 ( -84.52 by residue)
QMean score : 0.547
(partial model without unconserved sides chains):
PDB file :
Tito_3LV8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LV8-query.scw
PDB file :
Tito_Scwrl_3LV8.pdb
: