Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFRIGQGFDVHQLVEGRPLIIGGIEIPYEKGLLGHSDADVLLHTVADACLGAVGEGDIGKHFPDTDPEFKDADSFKLLQHVWGIVKQKGYVLGNIDCTIIAQKPKMLPYIEDMRKRIAEGLEADVSQVNVKATTTEKLGFTGRAEGIAAQATVLIQKG
4C8G Chain:C ((25-179))
--RIGQGYDVHQLVEGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSD--------DSRVLLRACAERVKAAGFTIQNVDSTVIAQAPKLAPHIDGMRANIAADLGLPLERVNVKAKTNEKLGYLGRGEGIEAQAAALLVK-
General information:
TITO was launched using:
RESULT:
Template:
4C8G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109098 for 1242 contacts (-87.8/contact) +
2D Compatibility (PS) -16161 + (NN) -8286 + (LL) 372
1D Compatibility (HY) -13600 + (ID) 4500
Total energy: -151273.0 ( -121.80 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_4C8G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4C8G-query.scw
PDB file :
Tito_Scwrl_4C8G.pdb
: