Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKILISMIAIVLSITLAACGSNHAAKNHSDSNGTEQVSQDTHSNEYNQTEQKAGTPHSKNQKKLVNVTLDRAIDGDTIKVIYNGKKDTVRYLLVDTPETKKPNSCVQPYGEDASKRNKELV-NSGKLQLEFDKGDRRDKYGRLLAYVYVDGKSVQETLLKEGLARVAYVYEPNTKYIDQFRLDEQEAKSDKLSIWSKSGYVTNRGFNGCVK
5IIF Chain:A ((12-135))-------------------------------------------------------------------ATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPEFN------EKYGPEASAFDKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHEQLLRKAEAQAKKEKLNIWS---------------


General information:
TITO was launched using:
RESULT:

Template: 5IIF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 623 -52751 -84.67 -428.87
target 2D structure prediction score : 0.67
Monomeric hydrophicity matching model chain A : 0.75

3D Compatibility (PKB) : -84.67
2D Compatibility (Sec. Struct. Predict.) : 0.67
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.526

(partial model without unconserved sides chains):
PDB file : Tito_5IIF.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5IIF-query.scw
PDB file : Tito_Scwrl_5IIF.pdb: