Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVVRSIGKKMQRISGPNALAVKGRPTQVYGHTHVRLDCRFMADSEFTAPEVTQLAEGLHRALSKLISMLRRGDPNGAAAGDLTLAQLSILVTLL--DQGPIRMTDLAAHERVRTPTTTVAIRRLEKIGLVKRSRDPSDLRAVLVDITPQGRAVHGESLANRRAALAALLSQLPRSDLETLRKALAPLERLASGEPASGPASNSPARKRA
4B8X Chain:A ((8-145))
---------------------------------------------------------AAITSIMRAQQILLGEVDAVVKPYGLTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNP----GTLATITDKGREVVEAATRDLMAM-DFGLGAYDAEECGEIFAMLRPLRVAAGDFD--------------
General information:
TITO was launched using:
RESULT:
Template:
4B8X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44885 for 876 contacts (-51.2/contact) +
2D Compatibility (PS) -14310 + (NN) -6362 + (LL) 4624
1D Compatibility (HY) -5600 + (ID) 1450
Total energy: -67983.0 ( -77.61 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_4B8X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4B8X-query.scw
PDB file :
Tito_Scwrl_4B8X.pdb
: