Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MASLLNARTAVITGGAQGLGLAIGQRFVAEGARVVLGDVNLEAT-----EVAAKRLGGDDVALAVRCDVTQADDVDILIRTAVERFGGLDVMVNNAGITRDATMRTMTEEQFDQVIAVHLKGTWNGTRLAAAIMRERKRGAIVNMSSVSGKVGMVGQTNYSAAKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAMTEAMPQRIWDQKLAEV-PMGRAGEPSEVASVAVFLASD-LSSYMTGTVLDVTGGRFI
4DMM Chain:D ((26-265))
----LTDRIALVTGASRGIGRAIALELAAAGAKVA---VNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIAT-------------KLLEVIPLGRYGEAAEVAGVVRFLAADPAAAYITGQVINIDGG---
General information:
TITO was launched using:
RESULT:
Template:
4DMM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116926 for 1988 contacts (-58.8/contact) +
2D Compatibility (PS) -24001 + (NN) -2870 + (LL) 2208
1D Compatibility (HY) -18800 + (ID) 5350
Total energy: -165739.0 ( -83.37 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_4DMM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DMM-query.scw
PDB file :
Tito_Scwrl_4DMM.pdb
: