Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMDLSQRLAGRVAVITGGGSGIGLAAGRRMRAEGATIVVGDVDVEAGGAAADELSG-----LFVPTDVCDEDAVNGLFDGAAETYGRIDIAFNNAGISPPEDNLIENTELAAWQRVQDVNLKSVYLCCRAALRHMVLAGKGSIVNTASFVAVMGSATSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKNPERAARRMVHVP-LGRFAEPDEIAAAVAFLASDDASFITASTFLVDGGISSAYVTPL
4URF Chain:A ((3-244))
-------LEGKTALVTGAGNGIGRTIALTYAAEGANVVVSDISDEWGRETLALIEGKGGKAVFQHADTAHPEDHDELIAAAKRAFGRLDIACNNAGISGEFTPTAETTD-AQWQRVIGINLSGVFYGVRAQIRAMLETGGGAIVNISSIAGQIG-IEGITPYTAAKHGVVGLTKTVAWEYGSKGIRINSVGPAFINTTLVQNV----PLETRRQLEQMHALRRLGETEEVANLVAWLSSDKASFVTGSYYAVDGG---------
General information:
TITO was launched using:
RESULT:
Template:
4URF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130683 for 2083 contacts (-62.7/contact) +
2D Compatibility (PS) -25826 + (NN) -13151 + (LL) 1780
1D Compatibility (HY) -17200 + (ID) 4550
Total energy: -189630.0 ( -91.04 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_4URF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4URF-query.scw
PDB file :
Tito_Scwrl_4URF.pdb
: