Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYEGPKTKFHALMQEQIHNEFTAAQQYVAIAVYFD--SEDLPQLAKHFYSQAVEERNHAMMLVQHLLDRDLRVEIPGVDTVRN-----QFDRPREALALALDQERTVTDQVGRLTAVARDEGDFLGEQFMQ-WFLQEQIEEVALMATLVRVADRAGA--NLFELENFVAREVDVAPAASGAPHAAGGRL
3VNX Chain:A ((33-202))
---RVEYHIECEAAINEQINIEYTISYVYHALHSYFARDNVGLPGFAKFFKEASDEEREHAHMLMDYQTKRGGRVELKPLAAPEMEFANDDKGEALYAMELALSLEKLNFQKLQALQAIADKHKDAALCDFVEGGLLSEQVDAVKEHAVYVSQLRRVGKGVGVYLLDQELGEE------------------
General information:
TITO was launched using:
RESULT:
Template:
3VNX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52582 for 1212 contacts (-43.4/contact) +
2D Compatibility (PS) -18069 + (NN) -15814 + (LL) 1032
1D Compatibility (HY) -6000 + (ID) 2300
Total energy: -93733.0 ( -77.34 by residue)
QMean score : 0.513
(partial model without unconserved sides chains):
PDB file :
Tito_3VNX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VNX-query.scw
PDB file :
Tito_Scwrl_3VNX.pdb
: