Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LAEGLRTIYFVRHGKTEWNMTGQMQGWGDSPLVAEGIDGAKAVGEVLKD--MQIDAVYTSTSKRTQDTAAYILGDRE---IEIQPLEELKEMGFGTWEGIRVTEIDEKHPEERAKILHSPET-Y-------------------K-----AEVNGGETYYELAERLLEGVEKIIAD--NPNGNILVVSHGMSLTLLLYL-LQGGTIEDHRKEAPRILNTSISIVEYQNGEFSLKKINEIGHLDLK |
1RII Chain:A ((2-220)) | --ANTGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLALDSADRLWIPVRRSWRLNERHYGALQGLDKAETKARYGEEQ----FMAWRRSYDTPPPPIERGSQFSQDADPRYADIGGGPLTECLADVVARFLPYFTDVIVGDLRVGKTVLIVAHGNSLRALVKHLDQMSDDEIVG--L-NIPTGIPLRYDLDSA---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RII.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -54586 for 1466 contacts (-37.2/contact) +
2D Compatibility (PS) -20526 + (NN) -6963 + (LL) 2092
1D Compatibility (HY) -6000 + (ID) 2150
Total energy: -88133.0 ( -60.12 by residue)
QMean score : 0.471
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