Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIRIIGSVGSGKTTLAKKLSEWYQIDYFETDRIVWKREGIE--V----R--------RTDIEKIAVLNKIL---QQENWIIEGVHLEAWVNES---FDQADVIIFLNLPKKQIRSQLIKRQIKQLLRLE----AAH----------YQVK----LNMLNKMFYWDDLFDQRTKPLIAEKMAQTPTKWLVVTEKTALQEIQKKLLQIISSRDIL
2BBW Chain:A ((29-234))
-RAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYK--SRGVLHQFSGTET-NKIWPYVYTLFSN----
General information:
TITO was launched using:
RESULT:
Template:
2BBW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50198 for 1150 contacts (-43.7/contact) +
2D Compatibility (PS) -17977 + (NN) -4359 + (LL) 1052
1D Compatibility (HY) -3200 + (ID) 1300
Total energy: -75982.0 ( -66.07 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_2BBW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BBW-query.scw
PDB file :
Tito_Scwrl_2BBW.pdb
: