Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIWDAYDQYGFITGLTLNRDQNIPQGLFHLVVDVILFHEDGDVLMMKRHPKKKAFPAYFEATAGGSALKGENAKQAILRELKEETGIVPQCLTFLNREW----FSE--------------RSYFVDHFIAKYNGAKDIITL-----QEGETVDYIWLKPEYIDLFLSKNKLIPSQIKLLKSLI
1F3Y Chain:A ((6-159))
---------------------MDSPPEGYRRNVGICLMNNDKKIFAASRLD----IPDAWQMP-QGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTV-EFKKPVYKEVLSVFA
General information:
TITO was launched using:
RESULT:
Template:
1F3Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60606 for 973 contacts (-62.3/contact) +
2D Compatibility (PS) -13849 + (NN) -2707 + (LL) 1904
1D Compatibility (HY) -1200 + (ID) 1500
Total energy: -77958.0 ( -80.12 by residue)
QMean score : 0.368
(partial model without unconserved sides chains):
PDB file :
Tito_1F3Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F3Y-query.scw
PDB file :
Tito_Scwrl_1F3Y.pdb
: