Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIQEK----------AIIIGGGPCGLSAAIHLKQIGIDALVIEKGNVVNSIYNYPTHQTFFSSSEKLEIGDVAFITENRKPVRIQALSYYREVVKRKNIRVNAFEMVRKVTKTQNNTFVIETSK-ETYTTPYCIIATGYYDHP----NYMGVPGEDLPKVFH-YFKEGHPYFDKDVVVI--GGKNSSVDAALELVKS----GARVTVLYRGNEYSPSIKPWILPEFEALVRN---GTIRMEFGA-CVEKITE----NEVVFRSGEKELITIKNDFVFAMTGYHPDHQFLEKIGVEIDKETGRPFFNEETMETNVEGVFIAGVIAAGNNANEIFIENGRFHGGHIAAEIAKRENH
4NTC Chain:A ((2-326))MSIGKLLSNGALLVDVLIIGAGPAGLSTATGLARQLHTAVVFDSGVYRNAKTQHMHNVLGW---------------DHRNPAELRAAGRADLTTRYSTIQFQNSTIEAIRQVETNQLFEARDNEGHSWYGRKVVLATGVRDIPLDIEGYSECWANG---IYHCLFCDGYEERGQETVGVLALGPIANPARALHLARMALRLSESVTIYTNGN-------EQLAKEIQQAAEESPVGASGLKFEARPIRRFEKGDVAKTVIVHLGESESKTE--GFLVYNPQTEVNGPFAKQLALNMT-EGGDILTTPPFYETSVPGVFAVGDCATPLKAVTPAVSMGSLAAGGLVAQLQAQAL-


General information:
TITO was launched using:
RESULT:

Template: 4NTC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1589 29972 18.86 101.60
target 2D structure prediction score : 0.54
Monomeric hydrophicity matching model chain A : 0.68

3D Compatibility (PKB) : 18.86
2D Compatibility (Sec. Struct. Predict.) : 0.54
1D Compatibility (Hydrophobicity) : 0.68
QMean score : 0.498

(partial model without unconserved sides chains):
PDB file : Tito_4NTC.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4NTC-query.scw
PDB file : Tito_Scwrl_4NTC.pdb: