Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREIRQYRLKKISKEEKTPGCVKIKKCIIM
2GF0 Chain:A ((7-177))
-NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLN------------------
General information:
TITO was launched using:
RESULT:
Template:
2GF0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95580 for 1339 contacts (-71.4/contact) +
2D Compatibility (PS) -18861 + (NN) -7301 + (LL) 1572
1D Compatibility (HY) -16000 + (ID) 3250
Total energy: -139420.0 ( -104.12 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_2GF0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GF0-query.scw
PDB file :
Tito_Scwrl_2GF0.pdb
: