Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVITRNESLDLGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRDL
3TQ8 Chain:A ((2-161))
-----IITLIAAMDKNRLIGRNNELPWHLPADLAHFKSITLG----------KPIVMGRRTFDSIG---KPLPHRRNIVITQQKNLI-IEGCDIFYSLDDALSALT---------KEPEVIIIGGARIFKEAL--PKADKMILTIINHSFEGDVYFPEWN-D----KEWKITSQIKH----------ERD--NPYPFQFLELRRL-
General information:
TITO was launched using:
RESULT:
Template:
3TQ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126783 for 1195 contacts (-106.1/contact) +
2D Compatibility (PS) -17500 + (NN) -7340 + (LL) 2896
1D Compatibility (HY) -10800 + (ID) 2850
Total energy: -162377.0 ( -135.88 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_3TQ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TQ8-query.scw
PDB file :
Tito_Scwrl_3TQ8.pdb
: