Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVLQVLHIPDERLRKVAKPVEEVNA-----EIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDVSENRD----ERLVLINPELLEKSGE-------TGIEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKARA
3E3U Chain:A ((2-178))
-AVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARRRGVVINPVLET-SEIPETMPDPDTDDEGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHG------
General information:
TITO was launched using:
RESULT:
Template:
3E3U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84254 for 1253 contacts (-67.2/contact) +
2D Compatibility (PS) -17081 + (NN) -1153 + (LL) 1000
1D Compatibility (HY) -10000 + (ID) 2650
Total energy: -114138.0 ( -91.09 by residue)
QMean score : 0.639
(partial model without unconserved sides chains):
PDB file :
Tito_3E3U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3E3U-query.scw
PDB file :
Tito_Scwrl_3E3U.pdb
: