Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRSAWKPPFCHPSVLRLVNRALKQGSINKVIKIHSRASVILPNCLGLKFAVYNGKDYIPVSVNDQNMIGHKFGEFSPTRKFAGHNGDKKAVRR
1QKF Chain:A ((8-80))
-------GVFVDDHLLEKVLELNAKGE-KRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITE-NMVGHKLGEFAPTRTY------------
General information:
TITO was launched using:
RESULT:
Template:
1QKF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68271 for 516 contacts (-132.3/contact) +
2D Compatibility (PS) -8094 + (NN) -5791 + (LL) 1292
1D Compatibility (HY) -6400 + (ID) 1550
Total energy: -88814.0 ( -172.12 by residue)
QMean score : 0.612
(partial model without unconserved sides chains):
PDB file :
Tito_1QKF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QKF-query.scw
PDB file :
Tito_Scwrl_1QKF.pdb
: