Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKIQQLQHHFGSHKVI--HNFNLDISKGEIVTFIGKSGCGKSTLLNVIGGFIHPSSGRVIIDNEIKQQ------PSPD--CLMLFQHHNLLPWKTINDNIRIGF-QQKISDEEINAQL----KLVDLEDRGKHFPEQLSGGMKQRVALCRAHVHKPNVILMDEPLGALDAFTRYKLQDQLVQLKHKTQSTIILVTHDIDEAIYLSDRIVLLGEGCNIISQYEITASHPRSRNDSHLLKIRNEIMETFALNHHQVEPEYYL
1OXV Chain:A ((4-217))
-IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKG----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1OXV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114950 for 1502 contacts (-76.5/contact) +
2D Compatibility (PS) -21846 + (NN) -13167 + (LL) 3700
1D Compatibility (HY) -17200 + (ID) 3450
Total energy: -166913.0 ( -111.13 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_1OXV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OXV-query.scw
PDB file :
Tito_Scwrl_1OXV.pdb
: