Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNES----FGYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELSK |
4P8R Chain:C ((10-339)) | -VIRVGINGFGRIGRVVFRAAQRRNDIEIVGINDLLDADYMAYMLKYDSTHGRFEGAVEVQGGALVVNGKKIRVTSERDPANLKWNEINVDVVVESTGLFLSDDTARKHIQAGAKKVVITGPSKDDTPMFVMGVNHTTYKG-EAIVSNASCTTNCLAPLAKVLNDKFGIVEGLMTTVHATTATQKTVDGPSQK-DWRGGRGAAQNIIPSSTGAAKAVGKIIPSLNGKLTGMAFRVPTPNVSVVDLTVRLERP-ATYKQICDAIKAASEGELKGILGYVDEEIVSSDINGIPLTSVFDARAG--ISLND-NFVKLVSWYDNETGYSNKVLDLIAHITK--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4P8R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -150015 for 2843 contacts (-52.8/contact) +
2D Compatibility (PS) -34529 + (NN) -6744 + (LL) 536
1D Compatibility (HY) -30000 + (ID) 8250
Total energy: -229002.0 ( -80.55 by residue)
QMean score : 0.501
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