Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYETYHSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHNLTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDFRGEPFEPMPKLMAVSEQVTKLQAVCAVCGSSSSRTQRLINGKPAKIDDPIILVGANESYEPRCRAHHIVAPSDNNKEEL
1W4R Chain:A ((19-192))
------RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSS-SFCTHDRNTMEALPACLLRDVAQ-EALGVAVIGIDEGQFFPD-IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGT------EKEVEVIGGADKYHSVCRLCYFK----------
General information:
TITO was launched using:
RESULT:
Template:
1W4R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93324 for 1426 contacts (-65.4/contact) +
2D Compatibility (PS) -18451 + (NN) -8039 + (LL) 1196
1D Compatibility (HY) -16000 + (ID) 3400
Total energy: -138018.0 ( -96.79 by residue)
QMean score : 0.433
(partial model without unconserved sides chains):
PDB file :
Tito_1W4R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W4R-query.scw
PDB file :
Tito_Scwrl_1W4R.pdb
: