Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTMNSVLECKELALYGGSFDPLHKAHLAIIEQTLELLP---FVQLI---VLPAYQNPFKKPCFLDAKTRFKELERALKGMPRVLLSDFEIKQERAVPTIESVLHFQKLY-R-PKTLYLVIGADCLRHLS---SWTN--AKELLKRVELVVFERIGYEEIQFK----------GRYHPLKG-IDAPISSSAIRASLGV
1NUP Chain:A ((3-210))
-------SRIPVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKK-DLAASHHRVAMARLALQTSDWIRVDPWESEQAQWMETVKVLRHHHSKLL-AVPELKLLCGADVLKTFQTPNLWKDAHIQEIVEKFGLVCVGRVSHDPKGYIAESPILRMHQHNIHLAKEPVQNEISATYIRRALGQ
General information:
TITO was launched using:
RESULT:
Template:
1NUP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110692 for 1222 contacts (-90.6/contact) +
2D Compatibility (PS) -17919 + (NN) -8325 + (LL) 432
1D Compatibility (HY) -10400 + (ID) 2050
Total energy: -148954.0 ( -121.89 by residue)
QMean score : 0.503
(partial model without unconserved sides chains):
PDB file :
Tito_1NUP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NUP-query.scw
PDB file :
Tito_Scwrl_1NUP.pdb
: