Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPLVGINMKNYINTRAQTSEWLEATIPLLGNFSDVDTFIF-PSMGTLETTANLLAGTSFGF--GPQNMAPEKSGPLTGEFSVESIIDLSANYVEIGHAERKNLFHEKTSEIAKKIQLALDEKITPVVCVGEGIRANDTNELKNALKKQIEALFDTIQVTQFKNVVLAYEPEWAIGKANSADTDYIESAHQALREIIRELGGDET--LVRIIYGGSVSKENAAEIVRQKNVDGLFVGRFGHKPQNFADIVSIVSKTKG
3M9Y Chain:B ((2-250))
MRTPIIAGNWK--MNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLL--------
General information:
TITO was launched using:
RESULT:
Template:
3M9Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111755 for 2016 contacts (-55.4/contact) +
2D Compatibility (PS) -26984 + (NN) -11746 + (LL) 360
1D Compatibility (HY) -12000 + (ID) 4050
Total energy: -166175.0 ( -82.43 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_3M9Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3M9Y-query.scw
PDB file :
Tito_Scwrl_3M9Y.pdb
: