Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLCTISDSQALLEVSYKTFDETFRA-----Q---NKPENMDAYLKTNFTAKKLSDELKNPHSYFYFVFHQEAIAGYLKLNIGDAQTEEIAGNTIEIERIYVLKSFQKKGLGKELFNQAIEIAKEVDAKKIWLGVWEKNKNAIQFYAKLGFIKNGQHDFFM---GDDCQTDIIMIKDL
1GHE Chain:A ((5-173))
QLRRVTAESFAHYRHGLAQLLFETVHGGASVGFMADLDMQQAYAWCD------GLKADIAAGSLLLWVVAEDDNVLASAQLSLCQKPN---GLNRAEVQKLMVLPSARGRGLGRQLMDEVEQVAVKHKRGLLHLDTE-AGSVAEAFYSALAYTRVGELPGYCATPDGRLHPTAIYFKTL
General information:
TITO was launched using:
RESULT:
Template:
1GHE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108902 for 1156 contacts (-94.2/contact) +
2D Compatibility (PS) -16676 + (NN) -749 + (LL) 880
1D Compatibility (HY) -7200 + (ID) 1300
Total energy: -133947.0 ( -115.87 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_1GHE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GHE-query.scw
PDB file :
Tito_Scwrl_1GHE.pdb
: