Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLSIKSIDSFEKDSIVEEVASLVFAGFKSKFTKTLFKETEAHDITYAFCHYIYTEKGENLLIAIQDELVCGCLFVTSKSDSYQKLYQTLRKFLSFSQCLKLIFLLSLLSHKPVQNERYIDF-ITVSPNFRGQGIGKTLISHCLE----TFHDEKITLYVAKKNSGAYKLYRNLGFQVIQKENSTLMGVLTGIKEWRKMEWIQLNVGKK
5CNP Chain:F ((59-142))
------------------------------------------------------------------------------------------RRFVVEDAQKNLIGLVELIEINYIH--RSAEFQIIIAPEHQGKGFARTLINRALDYSFTILNLHKIYLHVAVENPKAVHLYEECGF---------------------------------
General information:
TITO was launched using:
RESULT:
Template:
5CNP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55305 for 455 contacts (-121.5/contact) +
2D Compatibility (PS) -8358 + (NN) -1432 + (LL) 10456
1D Compatibility (HY) -6400 + (ID) 1350
Total energy: -62389.0 ( -137.12 by residue)
QMean score : 0.619
(partial model without unconserved sides chains):
PDB file :
Tito_5CNP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5CNP-query.scw
PDB file :
Tito_Scwrl_5CNP.pdb
: