Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQEALGLVETKGLVGAIEAADAMVKSANVTLTGYEKIGSGLVTVMVRGDVGAVKAATEAGAAAAKNV--GTVMSTHVIPRPHTDVEEILPVRVKSDE
3SSQ Chain:F ((22-112))
-PIAVGMIETRGFPAVVEAADAMVKAARVTLVGYEKIGSGRVTVIVRGDVSEVQASVAAGVDSAKRVNGGEVLSTHIIARPHENLEYVLPIR-----
General information:
TITO was launched using:
RESULT:
Template:
3SSQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30035 for 687 contacts (-43.7/contact) +
2D Compatibility (PS) -9910 + (NN) -4797 + (LL) 464
1D Compatibility (HY) -9600 + (ID) 2650
Total energy: -56528.0 ( -82.28 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_3SSQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SSQ-query.scw
PDB file :
Tito_Scwrl_3SSQ.pdb
: