Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LNVRANRVSEQMKKELGDILNRKIKDPRLGFVTVTGVDVTGDLQEAKVFISILGTDKEKENTLLALAKAHGFIRSEIGRRIRLRKVPEMSFEIDNSIAYGNRIDELLRDLNNDQ
3F3V Chain:A ((102-156))
-----------------------------------------------------------------------FLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDL----
General information:
TITO was launched using:
RESULT:
Template:
3F3V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8806 for 159 contacts (-55.4/contact) +
2D Compatibility (PS) -3768 + (NN) 3075 + (LL) 4868
1D Compatibility (HY) -4400 + (ID) 650
Total energy: -9681.0 ( -60.89 by residue)
QMean score : 0.279
(partial model without unconserved sides chains):
PDB file :
Tito_3F3V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F3V-query.scw
PDB file :
Tito_Scwrl_3F3V.pdb
: