Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLRGILPFAHDTLRKVVRSGDYVVDATCGNGHDTLLLAELVGINGHVLGFDIQQLAIDATNTRLENAGVSSQVELVCASHARIPEYTSKP----VRAAIFNLGYLPGGDKEITTTADSTLESIGHLMELLEVGGVIILVIYHGHPAGKQEKDAVMTFCEAIPQQDFHVLSYNFINQKNDAPFVIIIEKRKPRQS
4PON Chain:A ((7-197))
MILKKILPYSKELLKMAAGEGDIVIDATMGNGHDTQFLAELVGENGHVYAFDIQESAVANTKERLGE-AYQARTTLFHKSHDKIAKSLPPETHGKVAAAVFNLGN-----------GSSTIKAIEQLLSIMKDEGLIVLVVYHGN--------DVLDFCRNLDQQAARVLTYGFINQQNDPPFIVAIEKKAQ---
General information:
TITO was launched using:
RESULT:
Template:
4PON.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -171477 for 1318 contacts (-130.1/contact) +
2D Compatibility (PS) -18295 + (NN) -6038 + (LL) 588
1D Compatibility (HY) -17200 + (ID) 3850
Total energy: -216272.0 ( -164.09 by residue)
QMean score : 0.630
(partial model without unconserved sides chains):
PDB file :
Tito_4PON.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PON-query.scw
PDB file :
Tito_Scwrl_4PON.pdb
: