Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKKLILGLVMMMALFSLAACGGGGDVVKTDSGDVTKDELYDAMKDK------------YGSEFVQQLTFEKILGDKY-----KVSDEDVDKKFNEYKSQYGDQFSAVLTQSGLTEKSFKSQLKYNLLVQKATEANTDTSDKTLKKYYETWQP------DITVSHILVADENKAKEVEQKLKD------GEKFADLAKEYSTDTATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDIS-APVKTQYGYHIIQMDKPAT--KTTFEKDKKAVKASYLESQLTTENMQKTLKKEYKDANVKVEDKDLKDAFKDFDGSSSSDSDSSK |
| 3RFW Chain:A ((22-273)) | ------------------------ATVATVNGKSISDTEVSEFFAPMLRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEKDP-LYTKELD----------------------RAKDAILVNVYQEKIL-NTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGKELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALK-NGTITTTPVKTNFGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFK-KVINQKGQDLLNSAKVEYK----------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3RFW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -13576 for 1307 contacts (-10.4/contact) +
2D Compatibility (PS) -24050 + (NN) -12416 + (LL) 3624
1D Compatibility (HY) -13600 + (ID) 2700
Total energy: -62718.0 ( -47.99 by residue)
QMean score : 0.624
|
|
|