Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LSQFDEVIPRIGTNSEKWDGAEELFGRKDIIPMWVADMDFRAPKPVLDAFQRQIDHGIFGYSTKSKALVEAVIDWNKEQHQFEIDPSTLFFNGAVVPTISLAIRSLTNEGDAVLMVSPIYPPFFNVTKATERKVVMSPLIYENRQYRMDFNDLEKRMKEENVKLFLLCNPQNPGGRCFTKEELVELAKLCEKYQIPIVSDEIHADLVM-KNHKHVPMMVAAPFYQDQIITLMAATKTFNLAAIKASYYIITNKDYQTRFAAEQKYATTNGLNVFGIVGTEAAYRHGAPWLKELKEYIYSNYEYVKAELEKEVPEVGVTDLEATYLMWLDCRALPKDEKTIYT-DLIEAGVGVQMGSGFGHSGKGFVRFNIACPKETLEKSVKLLIQGLKK |
| 3L8A Chain:A ((38-419)) | -YDFTTRPDRLNQFTYKWKTSEN---NPELLQMWVADMDFLPVPEIKEAIINYGREHIFGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNT-HHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEA-KTKIKVMEPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVATPKNTVQEALSRIISVF-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3L8A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -247870 for 3411 contacts (-72.7/contact) +
2D Compatibility (PS) -40321 + (NN) -13485 + (LL) 608
1D Compatibility (HY) -32000 + (ID) 6850
Total energy: -339918.0 ( -99.65 by residue)
QMean score : 0.546
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