Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPEQIDGNKLDLEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGHVGFGTGKAQEVPDAIRKAVEDAKKNMVLVPTVDTTIPHTVVGHFGGGEILLKPASAGSGVTAGGPVRAVLELAGVADVSSKSLGSNTPINMVRATIDGIKQLKNAEDVAKLRGKTVEELLG
4B3M Chain:E ((4-151))
----------DFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGYYARRNMVEVPLQNGTIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILTKELGSRNPINIAYATMEALRQLRTKADVERLR---------
General information:
TITO was launched using:
RESULT:
Template:
4B3M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61946 for 1168 contacts (-53.0/contact) +
2D Compatibility (PS) -15984 + (NN) -4022 + (LL) 932
1D Compatibility (HY) -12000 + (ID) 3950
Total energy: -96970.0 ( -83.02 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_4B3M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4B3M-query.scw
PDB file :
Tito_Scwrl_4B3M.pdb
: