Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKIRLSKFIKMIVVILFLISVAASFYFFHVAQVRDDKSFISNGQRKPGNSLYAYDKSFDKLLKQKIEMTNQNIKQV--AWYVPAAKKTHKTAVVVHGFANSKENMKAYGWLFHKLGYNVLMPD-----------NIAHGESHGQLIG--------YGWNDRENIIKWTEMIVDKN--PSSQITLFGVSMGGATVMMASG--EKLPSQVVNIIEDCGYSSVWDELKFQAKEMYGLPAFPLLYEVSTISKIRAGFSYGQASSVEQLKKNNLPALFIHGDKDNFVPTSMVYDNYKATAGKKELYIVKGAKHAKSFETEPEKYEKRISSFLKKYEK- |
1L7A Chain:A ((1-318)) | --MQLFDLPLDQLQTYKPEKTAPKDFSEFWKLSLEELAKV------QAEPDLQPVDYPADGVKVYRLTYKSFGNARITGWYAVPDKEGPHPAIVKYHGYNASYDGEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSNFERAIDVAL---EQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAYNHLETKKELKVYRYFGHEY-----IPAFQTEKLAFFKQILKG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1L7A.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -70092 for 2484 contacts (-28.2/contact) +
2D Compatibility (PS) -30494 + (NN) -348 + (LL) 1176
1D Compatibility (HY) 800 + (ID) 2350
Total energy: -101308.0 ( -40.78 by residue)
QMean score : 0.328
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