Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIAAMEEELKLLVENLEDKSQETVLS-NVYYSGRYGEHELVLVQSGVGKVMSAMSVAILVESFKVDAIINTGSAGAVATGLNVGDVVVADTLVYHDVDLTAFGYDYGQMSMQPLYFHSDKTFVSTFEAVLSKEEMTSKVGLIATGDSFIAGQEKIDVIKGHFPQVLAVEMEGAAIAQAAQATGKPFVVVRAMSDTAAHDANITFDEFIIEAGKRSAQVLMAFLKAL
4P54 Chain:A ((4-227))
-KIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKEGVIASGDQFVHSKERKEFLVSEF-KASAVEMEGASVAFVCQKFGVPCCVLRSISNNADEKAGMSFDEFL----EKSAHTSAKFLKSM
General information:
TITO was launched using:
RESULT:
Template:
4P54.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -166658 for 1980 contacts (-84.2/contact) +
2D Compatibility (PS) -23864 + (NN) -7014 + (LL) 348
1D Compatibility (HY) -18000 + (ID) 3700
Total energy: -218888.0 ( -110.55 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_4P54.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P54-query.scw
PDB file :
Tito_Scwrl_4P54.pdb
: