Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARSLKKGPFVDGHLMTKIEKLNETDKKQVVKTWSRRSTIFPQFIGHTIAVYDGRKHVPVFISEDMVGHKLGEFAPTRTYKGHASDDKKTRR
1QKF Chain:A ((8-80))
-------GVFVDDHLLEKVLELNAKGEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTY------------
General information:
TITO was launched using:
RESULT:
Template:
1QKF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47033 for 516 contacts (-91.1/contact) +
2D Compatibility (PS) -7785 + (NN) -3972 + (LL) 1008
1D Compatibility (HY) -10000 + (ID) 2450
Total energy: -70232.0 ( -136.11 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_1QKF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QKF-query.scw
PDB file :
Tito_Scwrl_1QKF.pdb
: