Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTPFERLALYDINASIKEGSYVAVIGHTGSGKSTLLQHLNGLLKPTKGQISLGSTVIQAGKKNKDLKKLRKK---VGIVFQFPEHQLFEE-TVLKDISFGPMNFGVKKEDAEQKAR---EMLQLVGLSEELLDRSPFELSGGQMRRVAIAGVLAMDPEVLVLDEPTAGLDPRGRKEIMDMFYELHQRGNLTTILVTHSMEDAAAYADEMIVMHKGTIQASGSPRDLFLKGEEMAGWGLDLPETIKFQRHLEAALGVRFNEPMLTIEDAAAEIRALFQGEKTL
1VCI Chain:A ((27-239))
--------AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFG---------DRDVTYLPPKDRNISMVFQ--------HMTVYENIAFPL--KKFPKDEIDKRVRWAAELLQI----EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR-----------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VCI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107248 for 1435 contacts (-74.7/contact) +
2D Compatibility (PS) -21394 + (NN) -10341 + (LL) 6644
1D Compatibility (HY) -16400 + (ID) 3700
Total energy: -152439.0 ( -106.23 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_1VCI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VCI-query.scw
PDB file :
Tito_Scwrl_1VCI.pdb
: