Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMHTVTQTSLYGKDLLTLKDLSEEDINALLAEAGELKQ---NKIQP-IFHGKTLAMIFEKSSTRTRVSFEAGMAQLGGSALFLSQKDLQLGRGETVADTAKVLSGYVDAIMIRTFEHEKVEELAKEADIPVINGLTDKYHPCQALADLLTIKEI---KGKLKGVKVAYIGDGNNVAHSLMIGCAKMGCDISIASPKGYEVLDE-AAEAAKTYALQSGSSVTLTDDPIEAVKDADVIYSDVFTSMGQ-EAEEQERLAVFAP-YQVNAALVSHAKPDYTFLHCLPAHREEEVTAEIIDGPNSAVFQQAENRLHVQKALLKAILYKGESSKNC
4A8H Chain:B ((3-309))-----------RDYVTTETYTKEEMHYLVDLSLKIKEAIKNGYYPQLLKNKSLGMIFQQSSTRTRVSFETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHHSIVDLANCATIPVINGMSDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEV-SGGSFLVTDDA-SSVEGADFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDEVIDGKNSICFDEAENRLTSIRGLLVYLM---------


General information:
TITO was launched using:
RESULT:

Template: 4A8H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1680 -178026 -105.97 -599.41
target 2D structure prediction score : 0.72
Monomeric hydrophicity matching model chain B : 0.82

3D Compatibility (PKB) : -105.97
2D Compatibility (Sec. Struct. Predict.) : 0.72
1D Compatibility (Hydrophobicity) : 0.82
QMean score : 0.540

(partial model without unconserved sides chains):
PDB file : Tito_4A8H.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4A8H-query.scw
PDB file : Tito_Scwrl_4A8H.pdb: