Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence--------------MGKKMTIASLILMTAGLTACGANDNAMNDTRNNGNTRPIGYY-----TNENDADRQGDGIDHDGPVSELMEDQNDGNRNTTNVNNRDRVTADDRVPLATDGTYNNTNNRNMNRNAANNG--YDNQENRRL-AAKIANRVKQVKNVNDTQVMVSD-------DRVVIAVKSHREFTK--------------SDRDNVVKAARNYAN---------------GRDVQVSTDKGLFRKLHKMNNR-----------
1D9E Chain:A ((1-284))MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTVTQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKIFQELKQTF-GVKIITDVHEPSQAQPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGNEKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQRAQVAELARAGMAVGLAGLFIEAHPDPEPSALPLAKLEPFLKQMKAIDDLVKGFEELDTSK


General information:
TITO was launched using:
RESULT:

Template: 1D9E.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1004 66647 66.38 338.31
target 2D structure prediction score : 0.54
Monomeric hydrophicity matching model chain A : 0.64

3D Compatibility (PKB) : 66.38
2D Compatibility (Sec. Struct. Predict.) : 0.54
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.196

(partial model without unconserved sides chains):
PDB file : Tito_1D9E.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1D9E-query.scw
PDB file : Tito_Scwrl_1D9E.pdb: