Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHNNGRMLGVIGGSGFYTFFGS-DTRTVNSDTPYGQPSAPITIGTIGVHDVAFLPRHGAHHQYSAHAVPYRANMWALRALGVRRVFGPCAVGSLDPELEPGAVVVPDQLVDRTSGRA-DTYFDFGG-VHAAFADPYCPTLRAAVTG-----LPGVVDGGTMVVIQGPRFSTRAESQWFAA-AGCNLVNMTGYPEAVLARELELCYAAIALVTDVDAGVAAGDGVKAADVFAAFGENIELLKRLVRAAIDRVADE--RTCTHCQHHAGVPLPFELP
1WTA Chain:A ((9-273))
--GVRAHVGVIGGSGLYDPGIVENPVEVKVSTPYGNPSDFIVVGDVAGVKVAFLPRHGRGHRIPPHAINYRANIWALKALGVKWVISVSAVGSLREDYRPGDFVVPDQFIDMTKNRRHYTFYDGPVTVHVSMADPFCEDLRQRLIDSGRRLGYTVHERGTYVCIEGPRFSTRAESRVWKDVFKADIIGMTLVPEINLACEAQLCYATLAMVTDYDVWAD--RPVTAEEVERVMISNVERARRMLYDVIPKLAGEPELERCSCCRALDTA------
General information:
TITO was launched using:
RESULT:
Template:
1WTA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -177270 for 2155 contacts (-82.3/contact) +
2D Compatibility (PS) -27661 + (NN) -16651 + (LL) 532
1D Compatibility (HY) -20400 + (ID) 5300
Total energy: -246750.0 ( -114.50 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_1WTA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WTA-query.scw
PDB file :
Tito_Scwrl_1WTA.pdb
: