Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MASLLNARTAVITGGAQGLGLAIGQRFVAEGARVVLGDVNLEAT-----EVAAKRLGGDDVALAVRCDVTQADDVDILIRTAVERFGGLDVMVNNAGITRDATMRTMTEEQFDQVIAVHLKGTWNGTRLAAAIMRERKRGAIVNMSSVSGKVGMVGQTNYSAAKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAMTEAMPQRIWDQKLAEV-PMGRAGEPSEVASVAVFLASD-LSSYMTGTVLDVTGGRFI
4DMM Chain:C ((26-265))
----LTDRIALVTGASRGIGRAIALELAAAGAKVA---VNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDM----------EKLLEVIPLGRYGEAAEVAGVVRFLAADPAAAYITGQVINIDGG---
General information:
TITO was launched using:
RESULT:
Template:
4DMM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121538 for 1991 contacts (-61.0/contact) +
2D Compatibility (PS) -23895 + (NN) -1016 + (LL) 1736
1D Compatibility (HY) -19200 + (ID) 5400
Total energy: -169313.0 ( -85.04 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_4DMM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DMM-query.scw
PDB file :
Tito_Scwrl_4DMM.pdb
: