Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLPKPNNQTTVVITGASSGIGVELARGLAGRGFPLMLVARRRERLDELADQLRQEHCVGVEVLPLDLADTQARAQLADRL-----RSDAIAGLCNSAGFGTSGRFWELPFARESEEVVLNALALMELTHAALP--GMVKRGAGAVLNIASIAGFQPIPYMAVYSATKAFVLTFSEAVQEELHGTGVSVTALCPGPVPTEWA-----------EIASAERFS-----IPLAQ-VSPHDVAEAAIAGMLSGKRTVVPGIVPKFVSTSGRFAPRSLLLPAIRIGNRLRGGPSR
4DBZ Chain:B ((24-254))
------QDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELRE---AGVEA-DGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGLVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGRYVQPSEVAE--------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4DBZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123432 for 1663 contacts (-74.2/contact) +
2D Compatibility (PS) -22990 + (NN) -14712 + (LL) 2984
1D Compatibility (HY) -12000 + (ID) 3700
Total energy: -173850.0 ( -104.54 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_4DBZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DBZ-query.scw
PDB file :
Tito_Scwrl_4DBZ.pdb
: